One of the hallmarks of SARS-CoV-2 infection is the broad-spectrum of disease severity. COVID-19 usually results in a mild disease course that resolves on its own. However, some patients develop severe symptoms that require intensive care with mechanical ventilation. Understanding this distinction, and uncovering the cause of the difference between mild disease versus severe, has been the focus of many COVID-19 researchers. The role of the immune modular interferon (IFN) is at the center of some of the leading hypotheses.

Now, a team from the Republic of Korea has worked to unravel patients’ immune responses, performing single-cell RNA-seq using peripheral blood mononuclear cells (PBMCs) obtained from healthy donors, patients with mild or severe COVID-19, and patients with severe influenza. Their findings suggest that the type I IFN response “plays a pivotal role in exacerbating inflammation in severe COVID-19.”

This work is published in Science Immunology in the article, “Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19.

The single-cell RNA sequencing analysis of more than 59,000 cells (PBMCs) from three different patient cohorts provides a detailed look at patients’ immune responses to severe cases of COVID-19.

The team, led by Seong Seok Lee at the Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), sequenced the RNA from a total of 59,572 blood cells obtained from four healthy donors, eight patients with mild or severe COVID-19, and five patients with severe influenza. Patients in both the mild and severe COVID-19 cohorts all showed increased regulation of the TNF/IL-1ß-driven inflammatory response, while patients with severe COVID-19 also exhibited an increased IFN-I response. By comparison, patients with severe flu showed increased expression of various IFN-stimulated genes, but did not experience TNF/IL-1ß responses as seen in COVID-19 patients. Unlike the flu cohort, patients in the severe COVID-19 cohort exhibited the IFN-I signature concurrently with TNF/IL-1ß-driven inflammation—a combination also not seen in patients with milder cases of COVID-19.

The authors noted that patients with COVID-19 exhibited “hyper-inflammatory signatures across all types of cells among PBMCs, particularly up-regulation of the TNF/IL-1β-driven inflammatory response as compared to severe influenza.” They added that in classical monocytes from patients with severe COVID-19, “type I IFN response co-existed with the TNF/IL-1β-driven inflammation, and this was not seen in patients with milder COVID-19.”

The results suggest that patients with severe COVID-19 experience increased regulation of the type I interferon (IFN-I) inflammation-triggering pathway—a signature that the researchers also observed in patients hospitalized with severe cases of influenza.

By comparing COVID-19 and severe influenza, the team noted that they could observe that “the TNF/IL-1β-driven inflammatory response was dominant in COVID-19 across all types of cells among PBMCs, whereas the up-regulation of various interferon-stimulated genes (ISGs) was prominent in severe influenza.”

Based on their results, the scientists propose that the IFN-I response exacerbates inflammation in patients with severe COVID-19. Their results, along with past mouse studies that highlight how the timing of IFN-I expression is critical to determining the outcome of SARS-CoV-2 infection, support targeting IFN-I as a potential treatment strategy for severe COVID-19.

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