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  • Making Sense of Small Molecules
    There are some biological phenomena neither the genome nor transcriptome can fully explain. The field of metabolomics-the study of small-molecule metabolites-seeks to fill those ...
    8-1-2013
  • SIGnAL
    Within these categories, visitors will find a plethora of resources and tools, such as a CREB target database, Arabidopsis transcriptome datasets, and links to some Arabidopsis and ...
    8-1-2013
  • Six Websites You Need to Bookmark: August Picks
    Within these categories, visitors will find a plethora of resources and tools, such as a CREB target database, Arabidopsis transcriptome datasets, and links to some Arabidopsis and ...
    7-22-2013
  • Unraveling the Transcriptome
    RNA-Seq uses deep-sequencing techniques to profile the transcriptome. Researchers report ... This fueled the interest to characterize and survey the transcriptome of various cell ...
    7-1-2013
  • Study Reveals Far More Potentially Functional RNA Than Previously...
    McManus et al., studied a large set of RNA-seq data covering an array of tissue types and performed de novo transcriptome assembly. Overall, the investigators identified tens of ...
    6-28-2013
  • Harnessing the Clinical Power of Single Cells
    that permit analysis of the transcriptome of single cells using antisense RNA ... of the components of the transcriptome of the isolated cell than PCR. The ...
    6-21-2013
  • Exploring Exosomal RNA
    ... "In contrast to closed profiling technologies such as microarray and RT-PCR arrays, deep sequencing has literally opened our eyes on the complexity of the human transcriptome. ...
    6-15-2013
  • Stem Cell Science Advances
    ... Combining chromatin immunoprecipitation with massively parallel sequencing (ChIP-Seq) of both polyadenylated RNA and noncoding RNA, they queried the transcriptome along with ...
    6-11-2013
  • Querying the Cancer Transcriptome
    cancer, analyses that evaluate cancer transcriptome information alongside other data will ... of thought-provoking findings, the transcriptome, with its unprecedented and unexpected ...
    4-1-2013
  • Creative Approaches to Next-Gen Sequencing
    ... MYbaits is useful for gaining insights into gene structure, even when only transcriptome ... from western terrestrial garter snake transcriptome sequences were used to enrich genomic ...
    3-1-2013
  • mRNA Sequencing
    The C 1 Single-Cell Auto Prep system now features an mRNA sequencing application that can give researchers an end-to-end workflow for transcriptome analysis of 96 single cells. ...
    3-1-2013
  • Unveiling Biological Complexity with SMRT Sequencing
    ... Koren et al. noted that single molecule sequencing has advantages beyond genome assembly by presenting some preliminary analysis on the corn transcriptome generated by the Joint ...
    2-11-2013
  • The Buzz at ASHG
    ... Fluidigm's C1(tm) Single-Cell Auto Prep System can isolate and examine single cells, grouping them according to unique genomes and transcriptomes, for use in whole transcriptome ...
    1-15-2013
  • Next-Generation Sequencing vs. Microarrays
    ... for gene expression experiments as it provides a more detailed look at the transcriptome. ... Conversely, the various RNA-Seq methods cover all aspects of the transcriptome without any ...
    1-9-2013
  • Systems Biology Tackles Range of Challenges
    A transcriptome analysis showed that as butanol concentration rose, 40 genes were overexpressed, including ones coding for ADH degradation, ABC efflux exporters, the AgmR cluster, ...
    12-1-2012
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    Journal Articles

  • Multi-omics Approach for Estimating Metabolic Networks Using...
    Mitsunori Kayano, Seiya Imoto, Rui Yamaguchi, Satoru Miyano
    Journal of Computational Biology
    method based on low-order partial correlations with a robust correlation coefficient for estimating metabolic networks from metabolome, proteome, and transcriptome data. ...
  • Overexpression of TDRP1 Gene in Swine Testis Cell and Its Global...
    Manqing Liu, Wei Zhang, Wei Luo, Qinghua Nie
    DNA and Cell Biology
    Overexpression of TDRP1 Gene in Swine Testis Cell and Its Global Transcriptome Analysis DNA and Cell Biology The testis development-related protein-1 (TDRP1) gene was firstly ...
  • IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome...
    Wei Li, Jianxing Feng, Tao Jiang
    Journal of Computational Biology
    IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome Assembly Journal of ... One of them is transcriptome assembly based on RNA-Seq data, which aims at reconstructing ...
  • DNA Microarray Analysis of the Mouse Adrenal Gland for the Detection...
    Masataka Takamiya, Kiyoshi Saigusa, Koji Dewa
    Therapeutic Hypothermia and Temperature Management
    Therapeutic Hypothermia and Temperature Management We analyzed the adrenal gland transcriptome of mice killed by hypothermia using DNA microarray technology. A total of 4051 ...

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