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  • Pan-Cancer Initiative: Patterns Emerge across Diverse Tumor Types
    cancer types from The Cancer Genome Atlas (TCGA) Pan-Cancer dataset, which includes a ... 11 cancer types and 4,934 primary cancer specimens from the same TCGA Pan-Cancer dataset. ...
    9-26-2013
  • Pathway Analysis to Decipher Data
    ... He further discussed that Caleydo has been applied to various datasets and has been successfully used to analyze data from The Cancer Genome Atlas (TCGA). Dr. Lex has also focused ...
    4-15-2013
  • Querying the Cancer Transcriptome
    ... By using GFA to mine the multidimensional data from The Cancer Genome Atlas (TCGA), Dr. Suzuki and colleagues identified several microRNAs that can serve as robust prognostic ...
    4-1-2013
  • Exome Sample Prep
    They also provide good sequencing efficiencies as well as coverage of current genomics databases including RefSeq, CCDS, GENCODE, miRBase, TCGA, and UCSC. Designed to provide ...
    1-15-2013
  • Genome Testing Reduces Overtreatment
    ... The researchers, using data generated as part of The Cancer Genome Atlas (TCGA), based ... treat, and prevent it, according to the TCGA. But to recapitulate the American Society ...
    11-27-2012
  • RNA Analysis Unearths Invaluable Insights
    ... Ryan and colleagues are currently comparing alternative splicing patterns across The Cancer Genome Atlas (TCGA) data, one of the biggest RNA-Seq repositories. "For the first time, ...
    10-15-2012
  • Aggressive Breast Cancer May Respond to Ovarian Cancer Treatment
    The Cancer Genome Atlas (TCGA) consortium used six different analytical techniques (genomic DNA copy number arrays, DNA methylation, exome sequencing, mRNA arrays, microRNA ...
    9-24-2012
  • What Engineers Can Bring to Biotechnology
    For example, TCGA (The Cancer Genome Atlas) is an ambitious project to achieve ... data that is being generated through TCGA. Available data has shown that mutations ...
    9-15-2012
  • Sequencing Initiative Identifies New Lung Cancer Targets
    who is one of the co-leaders of this TCGA project. "This may be important in ... address the mutations causing SCLC. The TCGA consortium hopes their findings will open ...
    9-10-2012
  • Study Shines a Light on Colorectal Cancer
    In study results published online Wednesday in Nature , The Cancer Genome Atlas (TCGA) ... The TCGA network initially studied colon tumors as distinct from rectal tumors. "This ...
    7-19-2012
  • Why Biomarker Discovery Is Hard
    ... Studying Melanoma At MIT's Broad Institute, a major research effort focuses on The Cancer Genome Atlas (TCGA) project, for which the Broad is a Genome Data Analysis Center (GDAC). ...
    6-22-2012
  • Telomeric Allelic Instability Predicts Triple Negative Breast...
    ... Encouragingly, the same association between N tAI and chemotherapy sensitivity was subsequently also found in The Cancer Genome Atlas (TCGA) cohort of serous ovarian cancer ...
    3-23-2012
  • Compendia, H3 Partner to Apply Cancer Genomics to Drug Discovery
    The companies will also partner to find new targets as well as develop biomarkers for drug R&D. To this end they will mine data from The Cancer Genome Atlas (TCGA). "As we aim to ...
    2-14-2012
  • Researchers Independently Find Somatic Histone H3 Mutations in...
    ... Because the three genes weren't sequenced as part of the 600-gene The Cancer Genome Atlas (TCGA) Glioblastoma project, and mutations in H3F3A, ATRX, or DAXX weren't identified in ...
    1-30-2012
  • Future of DNA Sequencing Technology
    ... mechanism has enabled large cooperative projects-such as The Cancer Genome Atlas (TCGA), the International Cancer Genome Consortium (ICGC), and the Pediatric Cancer Genome ...
    10-1-2011

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