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July 30, 2015

First Artificial Ribosome Designed

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    The engineered ribosome, which unlike a natural ribosome (see photo) is tethered, may enable the production of new drugs and next-generation biomaterials. [© Molekuul/iStock]

    Scientists at the University of Illinois at Chicago and Northwestern University say they have engineered a tethered ribosome that works nearly as well as the authentic organelle that produces all the proteins and enzymes within the cell. The engineered ribosome may enable the production of new drugs and next-generation biomaterials and lead to a better understanding of how ribosomes function, according to the researchers.

    The artificial ribosome, called Ribo-T, was created in the laboratories of Alexander Mankin, Ph.D., director of the UIC College of Pharmacy's Center for Biomolecular Sciences, and Northwestern's Michael Jewett, Ph.D., assistant professor of chemical and biological engineering. The human-made ribosome may be able to be manipulated in the laboratory to do things natural ribosomes cannot do.

    When the cell makes a protein, mRNA is copied from DNA. The ribosomes' two subunits, one large and one small, unite on mRNA to form the functional unit that assembles the protein (translation). Once the protein molecule is complete, the ribosome subunits, both of which are themselves made up of RNA and protein, separate from each other.

    In a new study (“Protein synthesis by ribosomes with tethered subunits”) in Nature, the researchers describe the design and properties of Ribo-T, a ribosome with subunits that will not separate. Ribo-T may be able to be tuned to produce unique and functional polymers for exploring ribosome functions or producing designer therapeutics, and perhaps one day even non-biological polymers, point out Dr. Mankin." We felt like there was a very small chance Ribo-T could work, but we did not really know," he noted.

    Dr. Mankin said he and Dr. Jewett and their colleagues were frustrated in their investigations by the ribosomes' subunits falling apart and coming together in every cycle of protein synthesis. Could the subunits be permanently linked together? The researchers devised a novel designer ribosome with tethered subunits, i.e., Ribo-T.

    "What we were ultimately able to do was show that by creating an engineered ribosome where the ribosomal RNA is shared between the two subunits and linked by these small tethers, we could actually create a dual translation system," explained Dr. Jewett. "It was surprising that our hybrid chimeric RNA could support assembly of a functional ribosome in the cell. It was also surprising that this tethered ribosome could support growth in the absence of wild-type ribosomes."

    Turns out that Ribo-T worked even better than Drs. Mankin and Jewett believed it could. Not only did Ribo-T make proteins in a test-tube, it was able to make enough protein in bacterial cells that lacked natural ribosomes to keep the bacteria alive. The researchers were surprised by this. Scientists had previously believed that the ability of the two ribosomal subunits to separate was required for protein synthesis.

    "Obviously this assumption was incorrect," said Dr. Jewett. "Our new protein-making factory holds promise to expand the genetic code in a unique and transformative way, providing exciting opportunities for synthetic biology and biomolecular engineering.”

    "This is an exciting tool to explore ribosomal functions by experimenting with the most critical parts of the protein synthesis machine, which previously were 'untouchable,'" added Dr. Mankin.

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