Data Is the Key
The Collaborative Molecular Environment is intended to provide a means for data capture, visualization, annotation, and archiving using Microsoft Office, Windows Presentation Found-ation, and SharePoint Tech-nologies. Microsoft is partnering with alliance member company InterKnowlogy (www.interknowlogy.com) on the project, which is being tested by several other alliance members.
“Bringing research results to the bedside and patients´ responses to the research bench is at the core of translational medicine. Our focus on cancer diagnostic and structure-based drug development demonstrates how basic research directly impacts human health,“ says Peter Kuhn, professor of cell biology at The Scripps Research Institute. “The Collaborative Molecular Environ-ment developed with Inter-Knowlogy and Microsoft through the BioIT Alliance is a response to the critical need for productivity tools at the laboratory bench that connect experimental data, support decision-making on the spot, and communicate the data in context to other members of our research groups and our collaborators.“
In addition to making data easier to manage, early efforts of the alliance are focused on making data easier to share. Two member companies working on this are Affymetrix and Applied Biosystems. “Affymetrix is committed to facilitating translational medicine by providing tools that deliver high information content and data quality into basic research, clinical research, and diagnostic applications,“ explains Steve Lincoln, vp of informatics at Affymetrix.
“Through the BioIT Alliance, we are working closely with Microsoft to increase data access across our instrument systems and data-analysis software tools using Ecma Open Office XML,“ adds Catherine M. Burzik, president of Applied Biosystems. “This format enables life science companies to access data using the familiar Microsoft Office Excel interface, providing them with the insight they need to make decisions more quickly.“
“A unique aspect of the BioIT Alliance is that it is focused on applying existing technologies and standards to solve data integration challenges rather than developing new bioinformatics software. As part of our work with the BioIT Alliance, we are looking at how using the Open Office XML standard will make data generated by our Applied Biosystems´ instruments more easily integrated with applications, such as Excel. If together we can make existing tools more open and user-friendly using data interchange standards, then we will have made a big step toward reaching the Alliance´s goals,“ explains Tony Kerlavage, senior director, Applied Biosystems.